Research
Published software
- name
- NucleosomeDynamics
- language
- R and C
- function
- Suite for nucleosome positioning analysis using MNase-seq
- forms
-
Congresses attended
- period
- 2016
- name
- 15th European Conference on Computational Biology
- location
- World Forum Convention Center (The Hague, Nederlands)
- poster presented
- NucleosomeDynamics: a web portal to analyze and visualize MNase-seq data
- period
- 2016
- name
- XIII Symposium in Bioinformatics
- location
- Universidad politécnica de Valencia (Valencia, Spain)
- talk given
- NucleosomeDynamics: a web portal to analyze and visualize MNase-seq data
Workshops given
- period
- 2017
- name
- Multi-scale study of 3D Chromatin Structure
- location
- European Bioinformatics Institute (Cambridge, UK)
- topic I covered
- MNase-seq data analysis using the MuG research environment
- period
- 2017
- name
- Multi-scale genomics
- location
- Barcelona Supercomputing Center (Barcelona)
- topic I covered
- MNase-seq data analysis using the MuG research environment
- period
- 2016
- name
- 3DAROC 2016
- location
- Instituto Gulbenikan de la ciéncia (Lisboa, Portugal)
- topic I covered
- MNase-seq data analysis using the NucleosomeDynamics portal
Internships
- period
- 2011-2013
- descr.
-
- Master’s internship
- Colaboration scolarship
- Degree’s internship
- group
- Protein folding and conformational diseases
- institution
- Institute of Biotechnology and Biomedicine (Barcelona)
- period
- 2012
- descr.
- Internship
- group
- Peptide synthesis and protein structure
- institution
- Institute for Research in Biomedicine (Barcelona)
- period
- 2011
- descr.
- Exchange Student
- department
- Biophysics and radiadion biology
- institution
- Semmelweis University (Budapest)
Publications
- Buitrago D, Codó L, Illa R, et al. Nucleosome Dynamics: a new tool for the dynamic analysis of nucleosome positioning. Nucleic Acids Res. 2019;47(18):9511-9523. doi:10.1093/nar/gkz759
- Dans PD, Danilāne L, Ivani I, et al. Long-timescale dynamics of the Drew-Dickerson dodecamer. Nucleic Acids Res. 2016;44(9):4052-4066. doi:10.1093/nar/gkw264
- Zambrano R, Conchillo-Sole O, Iglesias V, et al. PrionW: a server to identify proteins containing glutamine/asparagine rich prion-like domains and their amyloid cores. Nucleic Acids Res. 2015;43(W1):W331-W337. doi:10.1093/nar/gkv490
- Navarro S, Diaz-Caballero M, Illa R, Ventura S. Aggregation propensity of neuronal receptors: potential implications in neurodegenerative disorders. Future Sci OA. 2015;1(2):FSO39. Published 2015 Sep 1. doi:10.4155/fso.15.39
- Fraga H, Graña-Montes R, Illa R, Covaleda G, Ventura S. Association between foldability and aggregation propensity in small disulfide-rich proteins. Antioxid Redox Signal. 2014;21(3):368-383. doi:10.1089/ars.2013.5543