522 lines
14 KiB
HTML
522 lines
14 KiB
HTML
<!DOCTYPE html>
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<html lang="en">
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<head>
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<meta name="generator" content=
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code {
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padding: 5px; }
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.donate {
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padding: 20px;
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width: 90%;
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font-size: smaller;
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word-wrap: break-word; }
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.donate img {
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padding: 10px; }
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</style>
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<link rel="stylesheet" href="style.css">
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<title>CV | Ricard Illa's page</title>
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</head>
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<body>
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<nav id="nav" class="nav justify-content-center"><a class=
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"nav-link" href="https://monotremata.xyz/"><svg xmlns=
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"http://www.w3.org/2000/svg" width="24" height="24" viewbox=
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"0 0 24 24" fill="none" stroke="currentcolor" stroke-width="2"
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stroke-linecap="round" stroke-linejoin="round" class=
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"feather feather-info">
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<line x1="12" y1="8" x2="12.01" y2="8"></line>
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</svg>about</a> <a class="nav-link" href=
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"https://monotremata.xyz/cv"><svg xmlns=
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"http://www.w3.org/2000/svg" width="24" height="24" viewbox=
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stroke-linecap="round" stroke-linejoin="round" class=
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"feather feather-file-text">
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<path d=
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"M14 2H6a2 2 0 0 0-2 2v16a2 2 0 0 0 2 2h12a2 2 0 0 0 2-2V8z">
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</path>
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<polyline points="14 2 14 8 20 8"></polyline>
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<line x1="16" y1="13" x2="8" y2="13"></line>
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<line x1="16" y1="17" x2="8" y2="17"></line>
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<polyline points="10 9 9 9 8 9"></polyline>
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</svg>CV</a> <a class="nav-link" href=
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"https://git.monotremata.xyz"><svg xmlns=
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"http://www.w3.org/2000/svg" width="24" height="24" viewbox=
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"feather feather-code">
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<polyline points="16 18 22 12 16 6"></polyline>
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<polyline points="8 6 2 12 8 18"></polyline>
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</svg>code</a> <a class="nav-link" href=
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"https://monotremata.xyz/contact"><svg xmlns=
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"http://www.w3.org/2000/svg" width="24" height="24" viewbox=
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"0 0 24 24" fill="none" stroke="currentcolor" stroke-width="2"
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stroke-linecap="round" stroke-linejoin="round" class=
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"feather feather-mail">
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<path d=
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"M4 4h16c1.1 0 2 .9 2 2v12c0 1.1-.9 2-2 2H4c-1.1 0-2-.9-2-2V6c0-1.1.9-2 2-2z">
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</path>
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<polyline points="22,6 12,13 2,6"></polyline>
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</svg>contact</a> <a class="nav-link" href=
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"https://monotremata.xyz/donate"><svg xmlns=
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"http://www.w3.org/2000/svg" width="24" height="24" viewbox=
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"0 0 24 24" fill="none" stroke="currentcolor" stroke-width="2"
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stroke-linecap="round" stroke-linejoin="round" class=
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"feather feather-coffee">
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<path d="M18 8h1a4 4 0 0 1 0 8h-1"></path>
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<path d="M2 8h16v9a4 4 0 0 1-4 4H6a4 4 0 0 1-4-4V8z"></path>
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<line x1="6" y1="1" x2="6" y2="4"></line>
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<line x1="10" y1="1" x2="10" y2="4"></line>
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<line x1="14" y1="1" x2="14" y2="4"></line>
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</svg>buy me a coffee</a></nav>
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<main id="main">
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<div class="header">
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<h1>CV</h1>
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<a href="https://monotremata.xyz/cv_ricardilla.pdf">pdf
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version</a></div>
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<hr>
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<div class="container">I'm a tinkerer, a <em>data-oriented</em>
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programmer with a bias towards <em>functional programming</em>. I'm
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a fan of <em>clean code</em> and <em>correctness</em>, as well as
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<em>minimalism</em>. I enjoy <em>modern</em> (but not bloated)
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technologies and I like playing with new things.
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<hr>
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<h2>Professional experience</h2>
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<div class="flex-jobs">
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<dl class="job">
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<dt><span class="date">period</span></dt>
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<dd><span class="date">January 2021 - current</span></dd>
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<dt>company</dt>
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<dd><strong>Trakken</strong></dd>
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<dt>position</dt>
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<dd><em>Data Engineer</em></dd>
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<dt>duties</dt>
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<dd>
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<ul>
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<li>Design and implement data infrastructure</li>
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<li>Develop and maintain internal tooling</li>
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</ul>
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</dd>
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<dt>technologies</dt>
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<dd>
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<ul>
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<li>Apache Airflow</li>
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<li>BigQuery</li>
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<li>Apache Beam</li>
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<li>Google Cloud Platform</li>
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<li>Python</li>
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</ul>
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</dd>
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</dl>
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<dl class="job">
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<dt><span class="date">period</span></dt>
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<dd><span class="date">June 2019 - October 2020</span></dd>
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<dt>company</dt>
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<dd><strong>Lead Ratings</strong></dd>
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<dt>position</dt>
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<dd><em>Data Engineer</em></dd>
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<dt>duties</dt>
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<dd>
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<ul>
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<li>Develop and maintain a data-centered ML SaaS platform</li>
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<li>Assist Data Scientists' internal workflow</li>
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<li>Develop connectors to third party platforms</li>
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</ul>
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</dd>
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<dt>technologies</dt>
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<dd>
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<ul>
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<li>Python</li>
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<li>Django</li>
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<li>Amazon web services</li>
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<li>Docker and Docker Swarm</li>
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<li>Redis</li>
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<li>MySQL</li>
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<li>Elasticsearch</li>
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<li>Numpy and Pandas</li>
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<li>Git</li>
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</ul>
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</dd>
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</dl>
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<dl class="job">
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<dt><span class="date">period</span></dt>
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<dd><span class="date">July 2018 - June 2020</span></dd>
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<dt>company</dt>
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<dd><strong>Sellbytell Group</strong></dd>
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<dt>position</dt>
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<dd><em>GCP Support Engineer</em> <span class="note">(Big Data and
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ML specialist)</span></dd>
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<dt>duties</dt>
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<dd>
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<ul>
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<li>Provide Big Data and Machine Learning technical support to
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Google Cloud Platform users</li>
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<li>Troubleshoot and debug customer’s issues</li>
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</ul>
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</dd>
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<dt>technologies</dt>
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<dd>
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<ul>
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<li>Google Cloud Platform</li>
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<li>BigQuery</li>
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<li>Google Dataflow / Apache Beam</li>
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<li>Google Composer / Apache Airflow</li>
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<li>Google Cloud Pub/Sub</li>
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<li>Python</li>
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</ul>
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</dd>
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</dl>
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<dl class="job">
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<dt><span class="date">period</span></dt>
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<dd><span class="date">November 2013 - April 2018</span></dd>
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<dt>institution</dt>
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<dd><strong>Institute for Research in Biomedicine</strong>
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<span class="note">(Barcelona)</span></dd>
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<dt>group</dt>
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<dd><strong>Molecular Modeling and Bioinformatics</strong></dd>
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<dt>position</dt>
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<dd><em>PhD Student</em></dd>
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<dt>duties</dt>
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<dd>
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<ul>
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<li>Perform bioinformatics research on Nucleosome Positioning</li>
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<li>Develop and implement statistical analysis methods</li>
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<li>Develop and maintain R packages</li>
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<li>Integrate my code into bigger genomics frameworks</li>
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</ul>
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</dd>
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<dt>technologies</dt>
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<dd>
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<ul>
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<li>R</li>
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<li>C</li>
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<li>Python</li>
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<li>Bioconductor</li>
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<li>Sun Grid Engine</li>
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<li>MongoDB</li>
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</ul>
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</dd>
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</dl>
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</div>
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<hr>
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<h2>Education</h2>
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<div class="flex-jobs">
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<dl class="job">
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<dt><span class="date">period</span></dt>
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<dd><span class="date">2012 - 2013</span></dd>
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<dt>degree</dt>
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<dd><em>MSc in Bioinformatics</em></dd>
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<dt>institution</dt>
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<dd><strong>Universitat Autònoma de Barcelona</strong></dd>
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</dl>
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<dl class="job">
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<dt><span class="date">period</span></dt>
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<dd><span class="date">2008 - 2012</span></dd>
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<dt>degree</dt>
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<dd><em>BSc in Biochemistry</em></dd>
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<dt>institution</dt>
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<dd><strong>Universitat Autònoma de Barcelona</strong></dd>
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</dl>
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<dl class="job">
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<dt><span class="date">period</span></dt>
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<dd><span class="date">2013 - 2018</span></dd>
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<dt>degree</dt>
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<dd><em>PhD in Biomedicine</em> <span class=
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"note">(unfinished)</span></dd>
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<dt>institution</dt>
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<dd><strong>Universitat de Barcelona</strong></dd>
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</dl>
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</div>
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<hr>
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<h2>Research</h2>
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<h3>Published software</h3>
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<div class="flex-jobs">
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<dl class="job">
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<dt>name</dt>
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<dd><em>NucleosomeDynamics</em></dd>
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<dt>language</dt>
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<dd>R and C</dd>
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<dt>function</dt>
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<dd>Suite for nucleosome positioning analysis using MNase-seq</dd>
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<dt>forms</dt>
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<dd>
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<ul>
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<li><a href="http://github.com/gthar/NucleosomeDynamics">Standalone
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R package</a></li>
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<li><a href=
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"https://mmb.irbbarcelona.org/NucleosomeDynamics/">Backend to the
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NucleosomeDynamics web service</a></li>
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<li><a href="https://www.multiscalegenomics.eu/">Tool integrated
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within the VRE of the Multiscale Genomics European project</a></li>
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</ul>
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</dd>
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</dl>
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</div>
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<h3>Congresses attended</h3>
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<div class="flex-jobs">
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<dl class="job">
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<dt><span class="date">period</span></dt>
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<dd><span class="date">2016</span></dd>
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<dt>name</dt>
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<dd><em>15th European Conference on Computational Biology</em></dd>
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<dt>location</dt>
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<dd><strong>World Forum Convention Center</strong> <span class=
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"note">(The Hague, Nederlands)</span></dd>
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<dt>poster presented</dt>
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<dd>NucleosomeDynamics: a web portal to analyze and visualize
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MNase-seq data</dd>
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</dl>
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<dl class="job">
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<dt><span class="date">period</span></dt>
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<dd><span class="date">2016</span></dd>
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<dt>name</dt>
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<dd><em>XIII Symposium in Bioinformatics</em></dd>
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<dt>location</dt>
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<dd><strong>Universidad politécnica de Valencia</strong>
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<span class="note">(Valencia, Spain)</span></dd>
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<dt>talk given</dt>
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<dd>NucleosomeDynamics: a web portal to analyze and visualize
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MNase-seq data</dd>
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</dl>
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</div>
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<h3>Workshops given</h3>
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<div class="flex-jobs">
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<dl class="job">
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<dt><span class="date">period</span></dt>
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<dd><span class="date">2017</span></dd>
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<dt>name</dt>
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<dd><em>Multi-scale study of 3D Chromatin Structure</em></dd>
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<dt>location</dt>
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<dd><strong>European Bioinformatics Institute</strong> <span class=
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"note">(Cambridge, UK)</span></dd>
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<dt>topic I covered</dt>
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<dd>MNase-seq data analysis using the MuG research environment</dd>
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</dl>
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<dl class="job">
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||
<dt><span class="date">period</span></dt>
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||
<dd><span class="date">2017</span></dd>
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||
<dt>name</dt>
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<dd><em>Multi-scale genomics</em></dd>
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<dt>location</dt>
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<dd><strong>Barcelona Supercomputing Center</strong> <span class=
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"note">(Barcelona)</span></dd>
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<dt>topic I covered</dt>
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<dd>MNase-seq data analysis using the MuG research environment</dd>
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</dl>
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<dl class="job">
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<dt><span class="date">period</span></dt>
|
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<dd><span class="date">2016</span></dd>
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||
<dt>name</dt>
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<dd><em>3DAROC 2016</em></dd>
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<dt>location</dt>
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<dd><strong>Instituto Gulbenikan de la ciéncia</strong>
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<span class="note">(Lisboa, Portugal)</span></dd>
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<dt>topic I covered</dt>
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<dd>MNase-seq data analysis using the NucleosomeDynamics
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portal</dd>
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</dl>
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</div>
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<h3>Internships</h3>
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<div class="flex-jobs">
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<dl class="job">
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<dt><span class="date">period</span></dt>
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<dd><span class="date">2011-2013</span></dd>
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<dt>descr.</dt>
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<dd>
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<ul>
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<li><em>Master’s internship</em></li>
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<li><em>Colaboration scolarship</em></li>
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<li><em>Degree’s internship</em></li>
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</ul>
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</dd>
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<dt>group</dt>
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<dd><strong>Protein folding and conformational
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diseases</strong></dd>
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<dt>institution</dt>
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<dd>Institute of Biotechnology and Biomedicine <span class=
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"note">(Barcelona)</span></dd>
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</dl>
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||
<dl class="job">
|
||
<dt><span class="date">period</span></dt>
|
||
<dd><span class="date">2012</span></dd>
|
||
<dt>descr.</dt>
|
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<dd><em>Internship</em></dd>
|
||
<dt>group</dt>
|
||
<dd><strong>Peptide synthesis and protein structure</strong></dd>
|
||
<dt>institution</dt>
|
||
<dd>Institute for Research in Biomedicine <span class=
|
||
"note">(Barcelona)</span></dd>
|
||
</dl>
|
||
<dl class="job">
|
||
<dt><span class="date">period</span></dt>
|
||
<dd><span class="date">2011</span></dd>
|
||
<dt>descr.</dt>
|
||
<dd><em>Exchange Student</em></dd>
|
||
<dt>department</dt>
|
||
<dd><strong>Biophysics and radiadion biology</strong></dd>
|
||
<dt>institution</dt>
|
||
<dd>Semmelweis University <span class="note">(Budapest)</span></dd>
|
||
</dl>
|
||
</div>
|
||
<h3>Publications</h3>
|
||
<ul>
|
||
<li><a href=
|
||
"https://academic.oup.com/nar/article/47/18/9511/5557727">Buitrago
|
||
D, Codó L, Illa R, et al. Nucleosome Dynamics: a new tool for the
|
||
dynamic analysis of nucleosome positioning. Nucleic Acids Res.
|
||
2019;47(18):9511-9523. doi:10.1093/nar/gkz759</a></li>
|
||
<li><a href=
|
||
"https://academic.oup.com/nar/article/44/9/4052/2462513">Dans PD,
|
||
Danilāne L, Ivani I, et al. Long-timescale dynamics of the
|
||
Drew-Dickerson dodecamer. Nucleic Acids Res. 2016;44(9):4052-4066.
|
||
doi:10.1093/nar/gkw264</a></li>
|
||
<li><a href=
|
||
"https://academic.oup.com/nar/article/43/W1/W331/2467935">Zambrano
|
||
R, Conchillo-Sole O, Iglesias V, et al. PrionW: a server to
|
||
identify proteins containing glutamine/asparagine rich prion-like
|
||
domains and their amyloid cores. Nucleic Acids Res.
|
||
2015;43(W1):W331-W337. doi:10.1093/nar/gkv490</a></li>
|
||
<li><a href=
|
||
"https://www.future-science.com/doi/10.4155/fso.15.39">Navarro S,
|
||
Diaz-Caballero M, Illa R, Ventura S. Aggregation propensity of
|
||
neuronal receptors: potential implications in neurodegenerative
|
||
disorders. Future Sci OA. 2015;1(2):FSO39. Published 2015 Sep 1.
|
||
doi:10.4155/fso.15.39</a></li>
|
||
<li><a href=
|
||
"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4076991/">Fraga H,
|
||
Graña-Montes R, Illa R, Covaleda G, Ventura S. Association between
|
||
foldability and aggregation propensity in small disulfide-rich
|
||
proteins. Antioxid Redox Signal. 2014;21(3):368-383.
|
||
doi:10.1089/ars.2013.5543</a></li>
|
||
</ul>
|
||
</div>
|
||
<hr></main>
|
||
</body>
|
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</html>
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